1. Alauzet, C., & Jumas-Bilak, E. (2014). The phylum Deferribacteres and the genus Caldithrix. In: Springer.
2. Alauzet, C., Marchandin, H., Courtin, P., Mory, F., Lemée, L., Pons, J.-L., . . .microbiology, a. (2014). Multilocus analysis reveals diversity in the genus Tissierella: Description of Tissierella carlieri sp. nov. in the new class Tissierellia classis nov. 37(1), 23-34.
3. Anandan, R., Dharumadurai, D., & Manogaran, G. P. (2016). An introduction to actinobacteria. In Actinobacteria-Basics and Biotechnological Applications:
Intechopen.
4. Armenante, P. M., Kafkewitz, D., Lewandowski, G. A., & Jou, C.-J. J. W. R. (1999).
Anaerobic–aerobic treatment of halogenated phenolic compounds. 33(3), 681-692.
5. Bødtker, G., Lysnes, K., Torsvik, T., Bjørnestad, E. Ø., Sunde, E. J. J. o. I. M., & Biotechnology. (2009). Microbial analysis of backflowed injection water from a nitrate-treated North Sea oil reservoir. 36(3), 439-450.
6. Bae, J. H., Schlessinger, J. J. M., & cells. (2010). Asymmetric tyrosine kinase arrangements in activation or autophosphorylation of receptor tyrosine kinases.29(5), 443-448.
7. Ballapragada, B. S., Stensel, H. D., Puhakka, J., Ferguson, J. F. J. E. s., & technology.
(1997). Effect of hydrogen on reductive dechlorination of chlorinated ethenes. 31(6),1728-1734.
8. Beltrame, P., Beltrame, P. L., Carniti, P., & Pitea, D. J. W. R. (1982). Kinetics of biodegradation of mixtures containing 2, 4-dichlorophenol in a continuous stirred reactor. 16(4), 429-433.
9. Berges, J. A., Falkowski, P. G. J. L., & Oceanography. (1998). Physiological stress and cell death in marine phytoplankton: induction of proteases in response to nitrogen or light limitation. 43(1), 129-135.
10. Beylier, M. R., Balaguer, M., Colprim, J., Pellicer-Nàcher, C., Ni, B., Smets, B., . . .Wang, R. J. C. B. (2011). 6.27–Biological nitrogen removal from domesticwastewater. 6, 329-340.
11. Bogdahn, M., & Kleiner, D. J. A. o. m. (1986). N 2 fixation and NH 4+ assimilation in the thermophilic anaerobes Clostridium thermosaccharolyticum and Clostridium thermoautotrophicum. 144(1), 102-104.
12. Bouhajja, E., Agathos, S. N., & George, I. F. J. B. a. (2016). Metagenomics: probing pollutant fate in natural and engineered ecosystems. 34(8), 1413-1426.
13. Bryant, D. A., & Frigaard, N.-U. J. T. i. m. (2006). Prokaryotic photosynthesis and phototrophy illuminated. 14(11), 488-496.
14. Chen, J.-S. (2004). Nitrogen fixation in the clostridia. In Genetics and regulation of nitrogen fixation in free-living bacteria (pp. 53-64): Springer.
15. Doskaliyev, D., Poulopoulos, S., Yeshmuratov, A., Aldyngurova, F., Zorpas, A.,Inglezakis, V. J. D., & Treatment, W. (2018). Effects of 2-chlorophenol and 2, 4, 6-trichlorophenol on an activated sludge sequencing batch reactor. 133, 283-291.
16. Ensley, B. D., & Suflita, J. M. (1995). Metabolism of environmental contaminants by mixed and pure cultures of sulfate-reducing bacteria. In Sulfate-reducing bacteria (pp. 293-332): Springer.
17. Farrell, A., & Quilty, B. J. B. (1999). Degradation of mono-chlorophenols by a mixed microbial community via a meta-cleavage pathway. 10(5), 353-362.
18. Fowler, D., Coyle, M., Skiba, U., Sutton, M. A., Cape, J. N., Reis, S., . . . Galloway,J. N. J. P. T. o. t. R. S. B. B. S. (2013). The global nitrogen cycle in the twenty-first century. 368(1621), 20130164.
19. Fuping, Q., Xiaojian, Z., Miao, H., & Xiasheng, G. J. Z. H. K. (1997). Study on the biodegradability and cometabolism of chlorobenzenes. 17(2), 142-145.
20. Galloway, J. N., Townsend, A. R., Erisman, J. W., Bekunda, M., Cai, Z., Freney, J.R., . . . Sutton, M. A. J. S. (2008). Transformation of the nitrogen cycle: recent trends,questions, and potential solutions. 320(5878), 889-892.
21. Genthner, B. R. S., Price, W. A., Pritchard, P. J. A., & Microbiology, E. (1989).Anaerobic degradation of chloroaromatic compounds in aquatic sediments under a variety of enrichment conditions. 55(6), 1466-1471.
22. Gibson, S. A., Suflita, J. M. J. A., & Microbiology, E. (1986). Extrapolation of biodegradation results to groundwater aquifers: reductive dehalogenation of aromatic compounds. 52(4), 681-688.
23. Gopalakrishnan, V., Spencer, C. N., Nezi, L., Reuben, A., Andrews, M., Karpinets,T., . . . Wei, S. J. S. (2018). Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients. 359(6371), 97-103.
24. Gruber, N., & Galloway, J. N. J. N. (2008). An Earth-system perspective of the global nitrogen cycle. 451(7176), 293-296.
25. Guo, J., Wu, C., Lv, S., Lu, D., Feng, C., Qi, X., . . . Wang, G. J. E. P. (2016).Associations of prenatal exposure to five chlorophenols with adverse birth outcomes. 214, 478-484.
26. Hall, E., Randle, W. J. W. S., & Technology. (1994). Chlorinated phenolics removal from bleached kraft mill wastewater in three secondary treatment processes. 29(5-6), 177-187.
27. Hendriksen, H. V., Larsen, S., Ahring, B. K. J. A., & Microbiology, E. (1992).Influence of a supplemental carbon source on anaerobic dechlorination of pentachlorophenol in granular sludge. 58(1), 365-370.
28. Igbinosa, E. O., Odjadjare, E. E., Chigor, V. N., Igbinosa, I. H., Emoghene, A. O.,Ekhaise, F. O., . . . Idemudia, O. G. J. T. S. W. J. (2013). Toxicological profile of chlorophenols and their derivatives in the environment: the public health perspective. 2013.
29. Kartal, B., Kuypers, M. M., Lavik, G., Schalk, J., Op den Camp, H. J., Jetten, M. S.,& Strous, M. J. E. m. (2007). Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. 9(3), 635-642.
30. Kindaichi, T., Yuri, S., Ozaki, N., Ohashi, A. J. W. S., & Technology. (2012).Ecophysiological role and function of uncultured Chloroflexi in an anammox reactor. 66(12), 2556-2561.
31. Kitunen, V. H., Valo, R. J., Salkinoja-Salonen, M. S. J. E. s., & technology. (1987).Contamination of soil around wood-preserving facilities by polychlorinated aromatic compounds. 21(1), 96-101.
32. Martienssen, M., & Schöps, R. J. W. R. (1999). Population dynamics of denitrifying bacteria in a model biocommunity. 33(3), 639-646.
33. Middeldorp, P., De Wolf, J., Zehnder, A., Schraa, G. J. A., & Microbiology, E.(1997). Enrichment and properties of a 1, 2, 4-trichlorobenzene-dechlorinating methanogenic microbial consortium. 63(4), 1225-1229.
34. Mikesell, M. D., Boyd, S. A. J. A., & Microbiology, E. (1986). Complete reductive dechlorination and mineralization of pentachlorophenol by anaerobic
microorganisms. 52(4), 861-865.
35. Olaniran, A. O., & Igbinosa, E. O. J. C. (2011). Chlorophenols and other related derivatives of environmental concern: properties, distribution and microbial degradation processes. 83(10), 1297-1306.
36. Op den Camp, H. J. M., Jetten, M. S. M., & Strous, M. (2007). Chapter 16 -
Anammox. In H. Bothe, S. J. Ferguson, & W. E. Newton (Eds.), Biology of the
Nitrogen Cycle (pp. 245-262). Amsterdam: Elsevier.
37. Paasivirta, J., Heinola, K., Humppi, T., Karjalainen, A., Knuutinen, J., Mäntykoski,K., . . . Tarhanen, J. J. C. (1985). Polychlorinated phenols, guaiacols and catechols in environment. 14(5), 469-491.
38. Reddy, G. V. B., & Gold, M. H. J. M. (2000). Degradation of pentachlorophenol by Phanerochaete chrysosporium: intermediates and reactions involved. 146(2), 405-413.
39. Sam, S. P., Tan, H. T., Sudesh, K., Adnan, R., Ting, A. S. Y., & Ng, S. L. J. J. o. E.C. E. (2021). Phenol and p-nitrophenol biodegradations by acclimated activated sludge: Influence of operational conditions on biodegradation kinetics and responding microbial communities. 9(4), 105420.
40. Steiert, J. G., Pignatello, J. J., Crawford, R. L. J. A., & microbiology, e. (1987).Degradation of chlorinated phenols by a pentachlorophenol-degrading bacterium.53(5), 907-910.
41. Stein, L. Y., Arp, D. J., Berube, P. M., Chain, P. S., Hauser, L., Jetten, M. S., . . . Opden Camp, H. J. J. E. m. (2007). Whole‐genome analysis of the ammonia‐oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation. 9(12),2993-3007.
Uncategorized References
1.Alauzet, C., & Jumas-Bilak, E. (2014). The phylum Deferribacteres and the genus Caldithrix. In: Springer.
2.Alauzet, C., Marchandin, H., Courtin, P., Mory, F., Lemée, L., Pons, J.-L., . . . microbiology, a. (2014). Multilocus analysis reveals diversity in the genus Tissierella: Description of Tissierella carlieri sp. nov. in the new class Tissierellia classis nov. 37(1), 23-34.
3.Anandan, R., Dharumadurai, D., & Manogaran, G. P. (2016). An introduction to actinobacteria. In Actinobacteria-Basics and Biotechnological Applications: Intechopen.
4.Armenante, P. M., Kafkewitz, D., Lewandowski, G. A., & Jou, C.-J. J. W. R. (1999). Anaerobic–aerobic treatment of halogenated phenolic compounds. 33(3), 681-692.
5.Bødtker, G., Lysnes, K., Torsvik, T., Bjørnestad, E. Ø., Sunde, E. J. J. o. I. M., & Biotechnology. (2009). Microbial analysis of backflowed injection water from a nitrate-treated North Sea oil reservoir. 36(3), 439-450.
6.Bae, J. H., Schlessinger, J. J. M., & cells. (2010). Asymmetric tyrosine kinase arrangements in activation or autophosphorylation of receptor tyrosine kinases. 29(5), 443-448.
7.Ballapragada, B. S., Stensel, H. D., Puhakka, J., Ferguson, J. F. J. E. s., & technology. (1997). Effect of hydrogen on reductive dechlorination of chlorinated ethenes. 31(6), 1728-1734.
8.Beltrame, P., Beltrame, P. L., Carniti, P., & Pitea, D. J. W. R. (1982). Kinetics of biodegradation of mixtures containing 2, 4-dichlorophenol in a continuous stirred reactor. 16(4), 429-433.
9.Berges, J. A., Falkowski, P. G. J. L., & Oceanography. (1998). Physiological stress and cell death in marine phytoplankton: induction of proteases in response to nitrogen or light limitation. 43(1), 129-135.
10.Beylier, M. R., Balaguer, M., Colprim, J., Pellicer-Nàcher, C., Ni, B., Smets, B., . . . Wang, R. J. C. B. (2011). 6.27–Biological nitrogen removal from domestic wastewater. 6, 329-340.
11.Bogdahn, M., & Kleiner, D. J. A. o. m. (1986). N 2 fixation and NH 4+ assimilation in the thermophilic anaerobes Clostridium thermosaccharolyticum and Clostridium thermoautotrophicum. 144(1), 102-104.
12.Bouhajja, E., Agathos, S. N., & George, I. F. J. B. a. (2016). Metagenomics: probing pollutant fate in natural and engineered ecosystems. 34(8), 1413-1426.
13.Bryant, D. A., & Frigaard, N.-U. J. T. i. m. (2006). Prokaryotic photosynthesis and phototrophy illuminated. 14(11), 488-496.
14.Chen, J.-S. (2004). Nitrogen fixation in the clostridia. In Genetics and regulation of nitrogen fixation in free-living bacteria (pp. 53-64): Springer.
15.Doskaliyev, D., Poulopoulos, S., Yeshmuratov, A., Aldyngurova, F., Zorpas, A., Inglezakis, V. J. D., & Treatment, W. (2018). Effects of 2-chlorophenol and 2, 4, 6-trichlorophenol on an activated sludge sequencing batch reactor. 133, 283-291.
16.Ensley, B. D., & Suflita, J. M. (1995). Metabolism of environmental contaminants by mixed and pure cultures of sulfate-reducing bacteria. In Sulfate-reducing bacteria (pp. 293-332): Springer.
17.Farrell, A., & Quilty, B. J. B. (1999). Degradation of mono-chlorophenols by a mixed microbial community via a meta-cleavage pathway. 10(5), 353-362.
18.Fowler, D., Coyle, M., Skiba, U., Sutton, M. A., Cape, J. N., Reis, S., . . . Galloway, J. N. J. P. T. o. t. R. S. B. B. S. (2013). The global nitrogen cycle in the twenty-first century. 368(1621), 20130164.
19.Fuping, Q., Xiaojian, Z., Miao, H., & Xiasheng, G. J. Z. H. K. (1997). Study on the biodegradability and cometabolism of chlorobenzenes. 17(2), 142-145.
20.Galloway, J. N., Townsend, A. R., Erisman, J. W., Bekunda, M., Cai, Z., Freney, J. R., . . . Sutton, M. A. J. S. (2008). Transformation of the nitrogen cycle: recent trends, questions, and potential solutions. 320(5878), 889-892.
21.Genthner, B. R. S., Price, W. A., Pritchard, P. J. A., & Microbiology, E. (1989). Anaerobic degradation of chloroaromatic compounds in aquatic sediments under a variety of enrichment conditions. 55(6), 1466-1471.
22.Gibson, S. A., Suflita, J. M. J. A., & Microbiology, E. (1986). Extrapolation of biodegradation results to groundwater aquifers: reductive dehalogenation of aromatic compounds. 52(4), 681-688.
23.Gopalakrishnan, V., Spencer, C. N., Nezi, L., Reuben, A., Andrews, M., Karpinets, T., . . . Wei, S. J. S. (2018). Gut microbiome modulates response to anti–PD-1 immunotherapy in melanoma patients. 359(6371), 97-103.
24.Gruber, N., & Galloway, J. N. J. N. (2008). An Earth-system perspective of the global nitrogen cycle. 451(7176), 293-296.
25.Guo, J., Wu, C., Lv, S., Lu, D., Feng, C., Qi, X., . . . Wang, G. J. E. P. (2016). Associations of prenatal exposure to five chlorophenols with adverse birth outcomes. 214, 478-484.
26.Hall, E., Randle, W. J. W. S., & Technology. (1994). Chlorinated phenolics removal from bleached kraft mill wastewater in three secondary treatment processes. 29(5-6), 177-187.
27.Hendriksen, H. V., Larsen, S., Ahring, B. K. J. A., & Microbiology, E. (1992). Influence of a supplemental carbon source on anaerobic dechlorination of pentachlorophenol in granular sludge. 58(1), 365-370.
28.Igbinosa, E. O., Odjadjare, E. E., Chigor, V. N., Igbinosa, I. H., Emoghene, A. O., Ekhaise, F. O., . . . Idemudia, O. G. J. T. S. W. J. (2013). Toxicological profile of chlorophenols and their derivatives in the environment: the public health perspective. 2013.
29.Kartal, B., Kuypers, M. M., Lavik, G., Schalk, J., Op den Camp, H. J., Jetten, M. S., & Strous, M. J. E. m. (2007). Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. 9(3), 635-642.
30.Kindaichi, T., Yuri, S., Ozaki, N., Ohashi, A. J. W. S., & Technology. (2012). Ecophysiological role and function of uncultured Chloroflexi in an anammox reactor. 66(12), 2556-2561.
31.Kitunen, V. H., Valo, R. J., Salkinoja-Salonen, M. S. J. E. s., & technology. (1987). Contamination of soil around wood-preserving facilities by polychlorinated aromatic compounds. 21(1), 96-101.
32.Martienssen, M., & Schöps, R. J. W. R. (1999). Population dynamics of denitrifying bacteria in a model biocommunity. 33(3), 639-646.
33.Middeldorp, P., De Wolf, J., Zehnder, A., Schraa, G. J. A., & Microbiology, E. (1997). Enrichment and properties of a 1, 2, 4-trichlorobenzene-dechlorinating methanogenic microbial consortium. 63(4), 1225-1229.
34.Mikesell, M. D., Boyd, S. A. J. A., & Microbiology, E. (1986). Complete reductive dechlorination and mineralization of pentachlorophenol by anaerobic microorganisms. 52(4), 861-865.
35.Olaniran, A. O., & Igbinosa, E. O. J. C. (2011). Chlorophenols and other related derivatives of environmental concern: properties, distribution and microbial degradation processes. 83(10), 1297-1306.
36.Op den Camp, H. J. M., Jetten, M. S. M., & Strous, M. (2007). Chapter 16 - Anammox. In H. Bothe, S. J. Ferguson, & W. E. Newton (Eds.), Biology of the Nitrogen Cycle (pp. 245-262). Amsterdam: Elsevier.
37.Paasivirta, J., Heinola, K., Humppi, T., Karjalainen, A., Knuutinen, J., Mäntykoski, K., . . . Tarhanen, J. J. C. (1985). Polychlorinated phenols, guaiacols and catechols in environment. 14(5), 469-491.
38.Reddy, G. V. B., & Gold, M. H. J. M. (2000). Degradation of pentachlorophenol by Phanerochaete chrysosporium: intermediates and reactions involved. 146(2), 405-413.
39.Sam, S. P., Tan, H. T., Sudesh, K., Adnan, R., Ting, A. S. Y., & Ng, S. L. J. J. o. E. C. E. (2021). Phenol and p-nitrophenol biodegradations by acclimated activated sludge: Influence of operational conditions on biodegradation kinetics and responding microbial communities. 9(4), 105420.
40.Steiert, J. G., Pignatello, J. J., Crawford, R. L. J. A., & microbiology, e. (1987). Degradation of chlorinated phenols by a pentachlorophenol-degrading bacterium. 53(5), 907-910.
41.Stein, L. Y., Arp, D. J., Berube, P. M., Chain, P. S., Hauser, L., Jetten, M. S., . . . Op den Camp, H. J. J. E. m. (2007). Whole‐genome analysis of the ammonia‐oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation. 9(12), 2993-3007.
42.Tavormina, P. L., Orphan, V. J., Kalyuzhnaya, M. G., Jetten, M. S., & Klotz, M. G. J. E. M. R. (2011). A novel family of functional operons encoding methane/ammonia monooxygenase‐related proteins in gammaproteobacterial methanotrophs. 3(1), 91-100.
43.Vallecillo, A., Garcia-Encina, P., Pena, M. J. W. S., & Technology. (1999). Anaerobic biodegradability and toxicity of chlorophenols. 40(8), 161-168.
44.Vitousek, P. M., Aber, J. D., Howarth, R. W., Likens, G. E., Matson, P. A., Schindler, D. W., . . . Tilman, D. G. J. E. a. (1997). Human alteration of the global nitrogen cycle: sources and consequences. 7(3), 737-750.
45.Zhao, X., Tan, W., Dang, Q., Li, R., & Xi, B. J. C. E. J. (2019). Enhanced biotic contributions to the dechlorination of pentachlorophenol by humus respiration from different compostable environments. 361, 1565-1575.
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